
set(SOURCES
aligner_all_ed.cu
aligner_all_sw.cu
aligner_all.h
aligner_best_approx_ed.cu
aligner_best_approx.h
aligner_best_approx_paired_ed.cu
aligner_best_approx_paired.h
aligner_best_approx_paired_sw.cu
aligner_best_approx_sw.cu
aligner_best_exact.h
aligner.h
aligner_init.cu
aligner_inst.h
aligner_sort.cu
compute_thread.cu
compute_thread.h
checksums.cu
checksums.h
defs.h
fmindex_def.h
input_thread.cpp
input_thread.h
locate.h
locate_inl.h
mapping.cu
mapping.h
mapping_impl.h
mapping_inl.h
mapq.cpp
mapq.h
params.h
params.cpp
persist.cu
persist.h
pipeline_states.h
reduce.cu
reduce.h
reduce_impl.h
reduce_inl.h
score_all.cu
score_all_impl.h
score_all_inl.h
score_best.cu
score_best_impl.h
score_best_inl.h
score_gapped.cu
score_ungapped.cu
score_paired.cu
score_paired_impl.h
score_paired_inl.h
score_opposite_impl.h
score_opposite_inl.h
score.h
scoring.h
scoring_inl.h
scoring_queues.h
scoring_queues_inl.h
scoring_queues_test.cu
seed_hit.h
select.cu
select.h
select_impl.h
select_inl.h
seed_hit_deque_array.cu
seed_hit_deque_array.h
seed_hit_deque_array_inl.h
seed_hit_deque_array_test.cu
stats.cpp
stats.h
traceback.cu
traceback.h
traceback_impl.h
traceback_inl.h
utils.h
)


addsources(${SOURCES})
